Quantitative Microscopy, Effortlessly Automated

Cytely transforms your microscope into an intelligent, autonomous system. Go from sample to publication-ready results faster, with higher quality and unparalleled ease. Powered by Data-Driven Microscopy.

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Ready-to-go assays
Publication-ready results
Cytely interface dashboard showing data-driven microscopy

How many of my cells have taken up the prey?

Are different cell phenotypes driving distinct uptake patterns?

How much of the prey is associated with cells and how much is outside?

Are the cells that have phagocytosed the prey evenly spread out?

Are the cells that have taken up the most prey morphologically different from other cells?

How evenly is the prey phagocytosed?

How can I image rare events without missing them?

How do I ensure my analysis is unbiased and reproducible?

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Setup in Minutes, Not Weeks
Setup in Minutes, Not Weeks

Setup in Minutes, Not Weeks

Forget complex parameter tuning and building analysis pipelines. Cytely automatically identifies the cells and objects in your sample with minimal...

Explore Instantly & Interactively
Explore Instantly & Interactively

Explore Instantly & Interactively

Cytely goes beyond data collection—it turns complex image data into immediate insight. Once analysis is complete, you're presented with a fully...

Your Microscope, Enhanced by Cytely
Your Microscope, Enhanced by Cytely

Your Microscope, Enhanced by Cytely

Continue using your existing microscope setup. Cytely integrates seamlessly into your imaging workflow: scan broadly, upload your data, and let Cytely...

Close the Loop with Smart Microscopy
Close the Loop with Smart Microscopy

Close the Loop with Smart Microscopy

Identify populations of interest through gating and send their coordinates back to the microscope for high-resolution or multi-modal follow-up...

Cytely Advantage

Built for Spatial Single-Cell Discovery
Built for Spatial Single-Cell Discovery

Built for Spatial Single-Cell Discovery

Cytely analyzes individual cells and objects at true single-cell resolution, retaining spatial and subcellular context. This is essential for studying...

Seamless Segmentation
Seamless Segmentation

Seamless Segmentation

Cytely's robust segmentation is powered by pre-trained AI, automatically identifying and profiling cells, debris, and subcellular structures. No...

Gating and Visual Analysis, Together
Gating and Visual Analysis, Together

Gating and Visual Analysis, Together

Dive deeper into your data with an image flow cytometry-like experience using data from the initial DIA scan. Plot any measured morphological or...

Shareable, Reproducible, Ready to Publish
Shareable, Reproducible, Ready to Publish

Shareable, Reproducible, Ready to Publish

Cytely lets you share complete experiments—raw data, gates, images, and plots—in a single secure link. Collaborators can explore data interactively...

Ready-to-Go Assays

Phagocytosis Assay

Phagocytosis Assay

Move beyond qualitative observations. Cytely provides ready-made analysis workflows for complex...

Rapid Cell Count & Classification
Rapid Cell Count & Classification

Rapid Cell Count & Classification

Cytely enables fast quantification of cell populations and contaminants based on morphology and staining. Get immediate counts of target cells,...

Transfection Efficiency Analysis
Transfection Efficiency Analysis

Transfection Efficiency Analysis

Identify transfected cells based on intensity thresholds, co-localization, or nuclear vs cytosolic signal distribution. Cytely automatically...

And More Assays
And More Assays

And More…

From co-culture assays to rare cell detection, Cytely supports flexible, user-defined workflows built on its robust segmentation and gating...